文档文献名称第一作者:
Radiomics: Data Are Also Images

内容简介:
Abstract

Objectives: Radiomics is the high-throughput analysis of medical images for treatment individualization. It conventionally involves the quantification of different characteristics of a region of interest such as a tumor delineated in the image. These characteristics can be intensity measurements (such as mean SUV), volume, geometrical shape and textural features. The lack of standardisation of image features and the use of different software implementations limits the reproducibility of radiomics studies. It is thus a major hurdle for potential clinical translation of radiomics applications. To address this limitation, an international collaboration of 19 teams from 8 countries (Image Biomarkers Standardization Initiative, IBSI, see https://arxiv.org/abs/1612.07003) was initiated to i) establish a comprehensive radiomics workflow description, ii) provide verified definitions of commonly used features and iii) provide benchmarking of features extraction and image processing steps, as well as reporting guidelines. Material and

Methods: Phase 1 of the initiative consisted in specifying and benchmarking across all participants more than 350 statistical, morphological and textural features (both in 2D or 3D) using a very simple digital phantom not requiring any image pre-processing steps. In phase 2, we added image pre-processing steps and features were benchmarked on 5 different configurations of a lung cancer patient CT image. Each configuration differed in the workflow of image processing steps, i.e. how the image stack is analyzed (2D: cases 1 and 2; 3D: 3 to 5), the interpolation method (none: 1; bi/trilinear: 2 to 4, tri-cubic: 5) and the grey-levels discretization approach (fixed bin size: 1 and 3; fixed number of bins: 2, 4 and 5). Both phases were iterative as the participants could compare their results with the other teams and update their workflow implementation accordingly. The most frequently contributed value of each feature was selected as its benchmark value. Agreement on a benchmark value was considered to exist if the value was produced by at least 50% of contributing teams (minimum 3), weighed by their overall accuracy in reproducing the benchmark values. Results: Twenty different software implementations across the 19 teams provided features values. In both phases, only a limited number of features were initially in agreement (phase 1: 12.3%, phase 2: 0.5 (0.0-1.4)%). The number of reliable features increased over time as problems were identified and solved, and agreement was achieved for most features (phase 1: 99.4%; phase 2: 96.4 (94.0-97.7)%). The remaining features for which no agreement could be reached were not commonly implemented.

Conclusions: We addressed the lack of standardization in radiomics features definition, implementation and image pre-processing steps by providing a digital phantom and reliable benchmark values for most features. Exploiting this provided standard to validate radiomics software used in future studies is recommended to increase the reproducibility of such studies.

下载链接:
http://radiomicsworld.com/assets/files/2020-12-04/1607091943-525151-j-nucl-med-2019-hatt-38s-44s.pdf

    4 个月 后

    摘要
    目的:影像组学是为个体化(individualization 个体化)治疗的医学影像的深入思考(high-throughput?)学习。它一般(conventionally 照惯例)包括对感兴趣区不同特征的量化(quantification 定量.量化),例如图像中肿瘤的勾画(delineate 描绘,画…的轮廓)。这些特征可以被测量:强度(例如平均SUV)、体积、形状(geometrical 几何的)、组织特征(textural 组织的)。图像特征标准化的缺乏及不同软件的使用(implementations 安装启用)限制了影像组学研究的再现性(reproducibility)。因此它是影像组学应用的潜在临床转换的主要障碍(hurdle)。为了解决这种限制,来自8个国家的19支队伍开创了国际合作:1)建立综合的影像组学工作流程;2)对常用特征提供明确的定义;3)为特征提取、图像处理步骤及报告指导提供基准测试(benchmarking)。材料和…………..


    方法:
    方案的第一步是通过使用一种非常简单的数字体膜而不需要任何图像预处理步骤去确定并测试所有病例超过350个统计学、形态学和组织的特征(包括2D和3D)(😅软件翻译:该计划的第一阶段包括使用非常简单的数字体模在所有参与者中指定和基准化超过350种统计,形态和纹理特征(无论是2D还是3D形式),而无需任何图像预处理步骤。 )。
    第2步我们增加了图像预处理过程及一个肺癌患者CT图像5种不同配置基准化的特征(😅软件翻译:在第2阶段中,我们添加了图像预处理步骤,并针对5种不同的肺癌患者CT图像配置对功能进行了基准测试。)。
    每种配置在图像处理的工作流程方面不同,例如,图像stack是如何分析的(2D:1和2个病例,3D:3到5个),插值方法(none: 1; bi/trilinear: 2 to 4, tri-cubic: 5),灰阶水平离散化方式(固定的bin大小:1和3,固定的bin数值:2,4和5)(😅软件翻译:每种配置在图像处理步骤的工作流程方面都不同,即如何分析图像堆栈(2D:案例1和2; 3D:3至5),插值方法(无:1; bi / trilinear:2至4,tri -cubic:5)和灰度离散化方法(固定的bin大小:1和3;固定的bin数量:2、4和5)。 )。
    每个步骤重复以使参与者的结果可以与其他团队相比较继而相应的更新它们的工作流程使用(😅软件翻译:这两个阶段都是重复的,因为参与者可以将其结果与其他团队进行比较并相应地更新其工作流程实施。 )。

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      2 个月 后

      能不能就这篇文献,好好讲讲

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